Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802072.4b.11b.6a with 2 members (mannose-p-dolichol utilization defect)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa /

... /

Panarthropoda / Arthropoda / Mandibulata / Pancrustacea / Hexapoda / Neoptera / Endopterygota / Apocrita / Aculeata / Formicidae / Myrmicinae /

Attini

Completeness score: 1.00

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This HOG has 77 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0802072.4b.11b.9b	232	154	mannose-p-dolichol utilization defect
2	HOG:E0802072.4b	121	804	mannose-p-dolichol utilization defect
3	HOG:E0802072.4b.11b.6a	116	66	mannose-p-dolichol utilization defect
4	HOG:E0802072.3a	39	62	mannose-p-dolichol utilization defect
5	HOG:E0802072	35	1044	mannose-p-dolichol utilization defect
6	HOG:E0802072.4b.11b	33	257	mannose-p-dolichol utilization defect
7	HOG:E0802072.4b.11b.9b.17a	24	15	mannose-p-dolichol utilization defect
8	HOG:E0802072.4b.16b	16	51	mannose-p-dolichol utilization defect
9	HOG:E0802072.4b.11b.9b.18b	16	8	mannose-p-dolichol utilization defect
10	HOG:E0802072.5a.20b.17b.26b	13	34	mannose-p-dolichol utilization defect
11	HOG:E0802072.5a.20a	10	10	mannose-p-dolichol utilization defect
12	HOG:E0802072.3a.6c	10	8	mannose-p-dolichol utilization defect
13	HOG:E0802072.5a.20b.17b.25a.6a	6	6	mannose-p-dolichol utilization defect
14	HOG:E0802072.4b.11b.9c	6	3	mannose-p-dolichol utilization defect
15	HOG:E0802072.3b	6	3	mannose-p-dolichol utilization defect
16	HOG:E0802072.4b.15b	5	5	mannose-p-dolichol utilization defect
17	HOG:E0802072.4b.15a	5	5	mannose-p-dolichol utilization defect
18	HOG:E0802072.3a.1b	5	3	mannose-p-dolichol utilization defect
19	HOG:E0802072.4b.11b.9b.17a.3b	4	2	mannose-p-dolichol utilization defect
20	HOG:E0802072.4b.11b.9b.14b	4	2	mannose-p-dolichol utilization defect
21	HOG:E0802072.4b.11b.9b.14a	4	2	mannose-p-dolichol utilization defect
22	HOG:E0802072.4b.11b.9a	4	2	mannose-p-dolichol utilization defect
23	HOG:E0802072.4b.11b.5b	4	3	mannose-p-dolichol utilization defect
24	HOG:E0802072.4b.11b.4a	4	2	mannose-p-dolichol utilization defect
25	HOG:E0802072.3a.6b	4	3	mannose-p-dolichol utilization defect

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